History

0.6.0 (2016-09-25

  • Refining implementation for breakend and symbolic allele class
  • Removing record.SV_CODES
  • Refactoring parser module a bit to make the code cleaner
  • Fixing small typos and problems in documentation

0.5.0 (2016-09-24)

  • Deactivating warnings on record parsing by default because of performance
  • Adding validation for INFO and FORMAT fields on reading (#8)
  • Adding predefined INFO and FORMAT fields to pyvcf.header (#32)

0.4.1 (2016-09-22)

  • Initially enabling codeclimate

0.4.0 (2016-09-22)

  • Exporting constants for encoding variant types
  • Exporting genotype constants HOM_REF, HOM_ALT, HET
  • Implementing Call.is_phased, Call.is_het, Call.is_variant, Call.is_phased, Call.is_hom_ref, Call.is_hom_alt
  • Removing Call.phased (breaks API, next release is 0.4.0)
  • Adding tests, fixing bugs for methods of Call

0.3.1 (2016-09-21)

  • Work around FORMAT/FT being a string; this is done so in the Delly output

0.3.0 (2016-09-21)

  • Reader and Writer can now be used as context manager (with with)
  • Including license in documentation, including Biopython license
  • Adding support for writing bgzf files (taken from Biopython)
  • Adding support for parsing arrays in header lines
  • Removing example-4.1-bnd.vcf example file because v4.1 tumor derival lacks ID field
  • Adding AltAlleleHeaderLine, MetaHeaderLine, PedigreeHeaderLine, and SampleHeaderLine
  • Renaming SimpleHeaderFile to SimpleHeaderLine
  • Warn on missing FILTER entries on parsing
  • Reordered parameters in from_stream and from_file (#18)
  • Renamed from_file to from_stream (#18)
  • Renamed Reader.jump_to to Reader.fetch
  • Adding header_without_lines function
  • Generally extending API to make it esier to use
  • Upgrading dependencies, enabling pyup-bot
  • Greatly extending documentation

0.2.1 (2016-09-19)

  • First release on PyPI