vcfpy

• vcfpy package
  • Submodules
  • vcfpy.version module
  • Module contents
    • AltAlleleHeaderLine
      • AltAlleleHeaderLine.from_mapping()
      • AltAlleleHeaderLine.id
    • AltRecord
      • AltRecord.serialize()
      • AltRecord.type
    • BreakEnd
      • BreakEnd.mate_chrom
      • BreakEnd.mate_orientation
      • BreakEnd.mate_pos
      • BreakEnd.orientation
      • BreakEnd.sequence
      • BreakEnd.serialize()
      • BreakEnd.within_main_assembly
    • Call
      • Call.called
      • Call.data
      • Call.gt_alleles
      • Call.gt_bases
      • Call.gt_phase_char
      • Call.gt_type
      • Call.is_filtered()
      • Call.is_het
      • Call.is_phased
      • Call.is_variant
      • Call.ploidy
      • Call.sample
      • Call.set_genotype()
      • Call.site
    • CompoundHeaderLine
      • CompoundHeaderLine.copy()
      • CompoundHeaderLine.mapping
      • CompoundHeaderLine.serialize()
      • CompoundHeaderLine.value
    • ContigHeaderLine
      • ContigHeaderLine.from_mapping()
      • ContigHeaderLine.id
      • ContigHeaderLine.length
    • FieldInfo
      • FieldInfo.description
      • FieldInfo.id
      • FieldInfo.number
      • FieldInfo.type
    • FilterHeaderLine
      • FilterHeaderLine.description
      • FilterHeaderLine.from_mapping()
      • FilterHeaderLine.id
    • FormatHeaderLine
      • FormatHeaderLine.description
      • FormatHeaderLine.from_mapping()
      • FormatHeaderLine.id
      • FormatHeaderLine.source
      • FormatHeaderLine.type
      • FormatHeaderLine.version
    • Header
      • Header.add_contig_line()
      • Header.add_filter_line()
      • Header.add_format_line()
      • Header.add_info_line()
      • Header.add_line()
      • Header.copy()
      • Header.filter_ids()
      • Header.format_ids()
      • Header.get_format_field_info()
      • Header.get_info_field_info()
      • Header.get_lines()
      • Header.has_header_line()
      • Header.info_ids()
      • Header.lines
      • Header.samples
    • HeaderLine
      • HeaderLine.copy()
      • HeaderLine.key
      • HeaderLine.serialize()
      • HeaderLine.value
    • HeaderNotFound
    • IncorrectVCFFormat
    • InfoHeaderLine
      • InfoHeaderLine.description
      • InfoHeaderLine.from_mapping()
      • InfoHeaderLine.id
      • InfoHeaderLine.source
      • InfoHeaderLine.type
      • InfoHeaderLine.version
    • InvalidHeaderException
    • InvalidRecordException
    • MetaHeaderLine
      • MetaHeaderLine.from_mapping()
      • MetaHeaderLine.id
    • PedigreeHeaderLine
      • PedigreeHeaderLine.from_mapping()
      • PedigreeHeaderLine.id
    • Reader
      • Reader.close()
      • Reader.fetch()
      • Reader.from_path()
      • Reader.from_stream()
      • Reader.header
      • Reader.parsed_samples
      • Reader.parser
      • Reader.path
      • Reader.record_checks
      • Reader.stream
      • Reader.tabix_file
      • Reader.tabix_path
    • Record
      • Record.ALT
      • Record.CHROM
      • Record.FILTER
      • Record.FORMAT
      • Record.ID
      • Record.INFO
      • Record.POS
      • Record.QUAL
      • Record.REF
      • Record.add_filter()
      • Record.add_format()
      • Record.affected_end
      • Record.affected_start
      • Record.begin
      • Record.call_for_sample
      • Record.calls
      • Record.end
      • Record.is_snv()
      • Record.update_calls()
    • SampleHeaderLine
      • SampleHeaderLine.from_mapping()
      • SampleHeaderLine.id
    • SamplesInfos
      • SamplesInfos.copy()
      • SamplesInfos.is_parsed()
      • SamplesInfos.name_to_idx
      • SamplesInfos.names
      • SamplesInfos.parsed_samples
    • SimpleHeaderLine
      • SimpleHeaderLine.copy()
      • SimpleHeaderLine.mapping
      • SimpleHeaderLine.serialize()
      • SimpleHeaderLine.value
    • SingleBreakEnd
    • Substitution
      • Substitution.serialize()
      • Substitution.value
    • SymbolicAllele
      • SymbolicAllele.serialize()
      • SymbolicAllele.value
    • UnparsedCall
      • UnparsedCall.sample
      • UnparsedCall.site
      • UnparsedCall.unparsed_data
    • VCFPyException
    • Writer
      • Writer.close()
      • Writer.from_path()
      • Writer.from_stream()
      • Writer.header
      • Writer.path
      • Writer.stream
      • Writer.write_record()
    • header_without_lines()